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Sports and leisure

Gold's Gym - Sports facility: Harajuku
[Open 24 hours a day.]
If you're jetlagged or working late but you still want to get in a workout, the branch of Gold's Gym in Harajuku is open 24 hours a day* and offers a one-day pass for non-members. There's a good range of weight-training and cardio equipment,...
Hyper Lane - Bowling alley: Ikebukuro
[Open 9am-8am daily.]
Bowling 23 hours a day in the heart of Ikebukuro. (They take an hour off for maintenance from 8-9am.)
Kawasaki Warehouse - Sports facility: Kawasaki
[Open 24 hours a day.]
Kowloon Walled City - once known as the most densely populated spot on earth - was a massive, extremely crowded Hong Kong housing settlement with more than 30,000 residents. Although the original complex was demolished in 1993, it lives on as the...
Lotte Kasai Golf - Sports facility: Kasai Rinkai Koen
[Open 24 hours a day.]
Ninety-minute unlimited drive packages are available at certain hours, or you can pay by the ball (Y16-22 depending on time of day). Note that while the facility is open 24 hours a day, they take a 45-minute maintenance break every day from...

Onsen

LaQua - Onsen: Korakuen
[Open 11am-9am (spa area) daily.]
The LaQua complex, part of Tokyo Dome City, features a hot-spring spa and a shopping center with more than seventy shops and restaurants, interspersed with a handful of amusement park rides. The baths feature sodium-chloride-infused natural...
Oedo-Onsen Monogatari - Onsen: Aomi
[Open 11am-9am (enter by 7am) daily.]
If Tokyo Disneyland had a 'Onsen-land' section this is what it might look like. "Soak in the ambiance of old Edo town life at one of Japan's largest onsen hot spring resorts." says the pamphlet. This pricey onsen caters mostly for day-tripper...
Note: The onsen listed here are closed from 9-11am.

Retail

Don Quijote - Retail: Shibuya
[Open 24 hours a day.]
Unlike the former branch across the street, this is a Mega-Donki, spread out over six floors, with spacious aisles, a multitude of cashiers and a much more comfortable shopping experience. And they're open 24 hours a day, handy for Shibuya...
Don Quijote Ikebukuro Higashi-guchi Ekimae - Retail: Ikebukuro
[Open 24 hours a day.]
This 24-hour branch of the discount store chain has seven crowded floors jam-packed with electrical goods, household items and beer and liquor, plus assorted novelties, junk, oddities and ephemera.
Jeans Mate - Retail: Ikebukuro
[Open 24 hours a day.]
The place to shop for jeans and other casual clothing in the middle of the night.